Please, select the kind of software you are interested in.

Data Genomics Proteomics Bibliomics

Biochemistry Area Phylogenetics Biomarker Discovery Functional Genomics
Drugs Analytical Chemistry

Biostatistics/Bioinformatics Area High-dimensional / omic data analysis Survival Analysis and Multi-state models
Regression models in non-standard settings Multiple comparison procedures
Machine Learning
Biomedical Text Mining
General biostatistics

Medical Area Oncology E-Health Other

Software Type Web Desktop App Command-Line Web Service (e.g.: REST) Library

Contact: cinbio@uvigo.es

Phone: +34 986 130 146

GeneCBR

Intelligent system for clinical diagnosis via microarrays

More info at: http://www.genecbr.org

WhichGenes

Custom gene set creation from multiple public databases

More info at: http://www.whichgenes.org

ALTER

Multiple sequence alignment format conversion tool

More info at: http://www.sing-group.org/ALTER

LA-iMageS

2D/3D viewer of elemental distribution from ICP-MS data

More info at: http://www.la-images.net

PileLine

Processing and comparison of genomic position files in Next Generation Sequencing

More info at: http://www.sing-group.org/pileline

PileLineGUI

Genome position files view and processing tool

More info at: http://www.sing-group.org/pileline

RubioSeq+

Next Generation Sequencing data analysis tool for DNA-seq, BS-seq and CNV

More info at: http://rubioseq.bioinfo.cnio.es

BDBM

Sequence database creation and management

More info at: http://www.sing-group.org/BDBM

BlasterJS

JavaScript based BLAST alignments viewer

More info at: http://www.sing-group.org/blasterjs

MAHMI

Mechanism of action of the human microbiome: from genetic sequences to immunomodulatory peptides

More info at: http://www.sing-group.org/mahmi

bicycle

BS-seq comprehensive tool for sample methylation analysis and comparison

More info at: http://www.sing-group.org/bicycle

BEW

Biofilms Experiment Workbench

More info at: http://www.sing-group.org/bew

Marky

Web-based multi-purpose annotation tool

More info at: http://www.sing-group.org/marky

SDS

Smart Drug Search

More info at: http://www.sing-group.org/sds

ADOPS

Automatic Detection of Positively Selected Sites

More info at: http://www.sing-group.org/adops

Mass-Up

Mass spectrometry utility for proteomics designed to support the preprocessing and analysis of MALDI-TOF mass spectrometry data

More info at: http://www.sing-group.org/massup

MLibrary

Database search engine for detection and identification of small compounds using mass spectrometry data

More info at: http://www.sing-group.org/MLibrary

DPD

Tool for assisting the user in a specific protocol for protein quantification based on 18O labeled inverse labeling and MALDI-TOF-MS analysis

More info at: http://www.sing-group.org/DPD

nextpresso

Pipeline to perform a complete analysis of RNA-seq data

More info at: http://www.sing-group.org/singulator

Antimicrobial Combination Network

First ever network reconstruction of AMP-drug combinations

More info at: http://www.sing-group.org/antimicrobialCombination

BiMS

Biclustering for mass spectrometry data

More info at: http://www.sing-group.org/bims

PathJam!

User-friendly tool for biological pathway analysis of human gene lists

More info at: http://www.pathjam.org

GeneCommittee

Study of the discriminative classification power of custom hypothesis in the form of biological relevant gene sets

More info at: http://www.sing-group.org/GC

BioAnnote

Annotate biomedical texts by using different high-quality online resources

More info at: http://www.sing-group.org/GC

mirGATE

Database of microRNA target predictions from multiple prediction algorithms

More info at: http://mirgate.bioinfo.cnio.es

InNoCBR

Nosocomial infection prediction from electronic health records

pandrugs

Oncological drug recommendation tool from genomic data

More info at: http://pandrugs.bioinfo.cnio.es

SENeGeS

Algorithm to detect genetic alterations

More info at: http://sidor.uvigo.es/en/technology-transfer/software/1052-atdga

seq2R

Simple method to detect compositional changes in genomic

More info at: http://sidor.uvigo.es/en/technology-transfer/software/1009-seq2r

condSURV

Estimation of the conditional survival function for ordered multivariate failure time data

More info at: http://sidor.uvigo.es/en/technology-transfer/software/982-condsurv

TPmsm

Estimation of the transition probabilities in multistate models

More info at: http://sidor.uvigo.es/en/technology-transfer/software/1005-tpmsm

TP.idm

Estimation of Transition Probabilities for the Illness-Death Model

More info at: http://sidor.uvigo.es/en/technology-transfer/software/1006-tpidm

p3state.msm

Analizing survival data

More info at: http://sidor.uvigo.es/en/technology-transfer/software/1010-p3statemsm

DTDA

Doubly truncated data analysis

More info at: http://sidor.uvigo.es/en/technology-transfer/software/1011-dtda

npregfast

Nonparametric Estimation of Regression Models with Factor-by-Curve Interactions

More info at: http://sidor.uvigo.es/en/technology-transfer/software/1003-npregfast

FWDselect

Selecting Variables in Regression Models

More info at: http://sidor.uvigo.es/en/technology-transfer/software/1004-fwdselect

Sgof

Multiple hypotheses testing

More info at: http://sidor.uvigo.es/en/technology-transfer/software/1008-sgof

prop.comb.RR

Analyzing Combination of Proportions and Relative Risk

More info at: http://sidor.uvigo.es/en/technology-transfer/software/1007-propcombrr